Post any defects you find in the released or beta versions of the ImageMagick software here. Include the ImageMagick version, OS, and any command-line required to reproduce the problem. Got a patch for a bug? Post it here.
As far a I know only some functions support the channel flag. Most were retrofit at needed. I don't think the channel flag was a part of IM 6 originally except in connection with -separate.
But the IM developers can explain further or correct me if needed.
Many of the image filters support -channel in ImageMagick version 6. Channels are fully integrated into version 7, meaning any image filter, where it makes sense, supports a channel mask.