I made a gif file from a pdf file using image magick which I made from a tex file using xelatex and I confirmed using GIMP that all of my 120 frames do have a white background and none of the frames have any alpha channels. I made the gif with the command
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convert -delay 4 -loop 1 -density 200 -alpha remove coordinates.pdf coordinates.gif
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convert coordinates.gif coordinates.mpg