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Error DICOM images -> irregular channel geometry not supported

Posted: 2015-11-17T07:01:06-07:00
by talixx
I am trying to use the command Identify -verbose to get the image proprieties from a DICOM image from a linux terminal. However, an error is occurring, like:
identify.im6: irregular channel geometry not supported `/tmp/magick-JJeAk1BV' @ error/jp2.c/ReadJP2Image/532.

Here is a image from my linux terminal
https://webclient.amplisoftware.com.br/ ... U2Md9x2jqf

I am completely sure that it is a DICOM image, I need to get the image proprieties from this image.

Thanks in advance.

Re: Error DICOM images -> irregular channel geometry not supported

Posted: 2015-11-17T08:10:45-07:00
by dlemstra
Can you share your DICOM image? Please make sure you anonymize it before you share it. Feel free to send me a PM with a link to the file if you don't want to share it publicly.

What is your ImageMagick version and your operating system?

Re: Error DICOM images -> irregular channel geometry not supported

Posted: 2015-11-17T09:06:28-07:00
by talixx
UPDATE: I did some tests using a new version from ImageMagick, but I still have some problems.
This follow link contains DICOM images and a screnshot from my terminal.
https://webclient.amplisoftware.com.br/ ... 7OQKtQmHuX

The new error message is:
[ beta | root > /tmp ]# identify -verbose 3BB55E03 3BB55E0C 3BB55E28
identify: no decode delegate for this image format `J2K' @ error/constitute.c/ReadImage/501.

ImageMagick version:
[ beta | root > /tmp ]# identify -version
Version: ImageMagick 6.9.2-6 Q16 x86_64 2015-11-13 http://www.imagemagick.org
Copyright: Copyright (C) 1999-2015 ImageMagick Studio LLC
License: http://www.imagemagick.org/script/license.php
Features: Cipher DPC Modules OpenMP
Delegates (built-in): bzlib cairo djvu fftw fontconfig freetype fpx gslib jng jpeg lcms ltdl lzma pangocairo png ps tiff webp wmf x xml zlib

My operating system is a CentOS Linux release 7.1.1503 (Core)

Re: Error DICOM images -> irregular channel geometry not supported

Posted: 2015-11-18T06:41:19-07:00
by talixx
PROBLEM SOLVED

I found a solution to my problem.
I use a command to decompress a compressed DICOM and now It is working perfectly.
The command is:
$ gdcmconv --raw compressed.dcm uncompressed.dcm
See the source: http://gdcm.sourceforge.net/html/gdcmconv.html

So, now I am able to convert, identify... any DICOM image.

Thanks.