I had pages in PNG format, edited in Kolourpaint, and was trying to use ImageMagick to assemble them into a PDF file with one image per page. In the generated PDF file, some of the pages were correct, but some of the pages had uneven margins (not all in the same direction).
I was using ImageMagick 6.8.8-10 Q16 i686 2015-03-10 on Fedora 22 (viewing in Evince). Downloaded and installed the updated ImageMagick-7.0.1-10-Q8-x64-dll.exe on Windows 10 (and viewed with Adobe Reader) and it behaved the same.
This could be a Kolourpaint bug, or a feature, but here seems like the place to check.
Here is a test image that shows the behaviour when converted to a 1-page PDF by itself:
https://www.dropbox.com/s/tksin9t7wn8c2 ... n.zip?dl=1
Drawing of the results:
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convert test.png test.pdf
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convert test.png test.bmp
convert test.bmp test.pdf
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convert test.bmp test2.png
convert test2.png test.pdf
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convert -flip test.png test2.png
convert test2.png test.pdf